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Homologous Genes

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No Screenshot Unrooted 1.0
Unrooted is a tree drawing software able to draw any binary tree expressed in the standard phylogenetic tree format (e.g., the format used by the PHYLIP package). Trees are drawn in an unrooted way, that is, using a circular shape, with labels aligned with terminal branches.Use of Unrooted:A file selection box allows to select the tree file which then is drawn on the screen. A postscript output of the drawing can be prepared (on Macintosh, the...
Price: USD $0.00;   License: Freeware   File Size: 1024 KB;
Platform: Windows

Sequence Alignment - Phylogeny - PBIL - Hovergen - Hobacgen - Hogenom - RTKdb - Phylogenetic - Homology - Homologous Genes
No Screenshot NJPlot 2.3
Create phylogenetic trees with this tool. NJplot is a tree drawing software able to draw any phylogenetic tree expressed in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP package). NJplot is especially handy for rooting the unrooted trees obtained from parsimony, distance or maximum likelihood tree-building methods.Use of NJPlotAny rooting of the unrooted tree can be interactively specified using the mouse. NJplot...
Price: USD $0.00;   License: Freeware   File Size: 1024 KB;
Platform: Windows

Sequence Alignment - Phylogeny - PBIL - Hovergen - Hobacgen - Hogenom - RTKdb - Phylogenetic - Homology - Homologous Genes
No Screenshot TESD (Transposable Element Simulator Dynamics) 1.0
TESD (Transposable Element Simulator Dynamics) is a scientific software developed by the Laboratoire de Biom trie et Biologie Evolutive, it simulates the number of genomic TE copies in different populations across generations (according to the Island Model), using classical models of TE dynamics. The parameters of the models (transposition and excision rates, selection intensity, recombination rate, migration rate, population sizes and number...

Price: USD $0.00;   License: Freeware   File Size: 842 KB;
Platform: Windows

Sequence Alignment - Phylogeny - PBIL - Hovergen - Hobacgen - Hogenom - RTKdb - Phylogenetic - Homology - Homologous Genes
No Screenshot CHSMiner 1.1
CHSMiner is a small, Java based application specially designed to offer you an integrated GUI environment to help you with the detection, evaluation and visualization of chromosomal homologous segments (CHSs). for WindowsAll

Price: USD $0.00;   License: Freeware  
Platform: WindowsAll

Viewer - View - Visualization - CHSMiner - Chromosomal Homologous Segments - Detect CHS - View CHS
No Screenshot CLANS 2
Frequently, homology is used as a reason to transfer knowledge about function or structure from known to unknown proteins. Although phylogenies are the method of choice when attempting to determine homology, the most frequently used marker is pairwise sequence similarity. The problem of finding groups of co-regulated genes across a number of microarray experiments is quite similar to the problem of finding groups of homologous proteins in a...

Price: USD $0.00;   License: Freeware  
Platform: WindowsAll

Analyze - Cluster - Sequence - Cluster Analysis - CLANS - Sequence Analysis - Analyze Cluster
No Screenshot Gene Visualizer New
Gene Visualizer is a small app designed to display an organism's genes visually. The program takes two sets of genes as input. One is a list of an organism's predicted genes, and the other is a list of an organism's known genes. It can be useful to compare how the two lists of genes match up, which is where Gene Visualizer comes in handy. The organism's genome is laid out linearly from left to right. Genes are shown near the 6 horizontal...

Price: USD $0.00;   License: Freeware  
Platform: WindowsAll

Visualizer - Visualize - Gene - Gene Visualizer - Visualize Gene - Explore Gene - View Gene
No Screenshot GenemiR 1.0
The GenemiR software application is a tool aimed at biologists and bioinformaticians who wish to find prediction and expression patterns in sets of microRNAs and genes. The program works with mouse and human target prediction and expression data. One of two types of query can be made by selecting: · one or more microRNAs; · one or more genes or transcripts; to respectively obtain: · a list of genes predicted to...

Price: USD $0.00;   License: Freeware  
Platform: Windows XP, Windows, Windows Vista, Mac OS 7.x, Mac

Prediction - Gene - GenemiR - MicroRNA Target Prediction - Mammalian MicroRNA - Expression Pattern - MicroRNA
No Screenshot Venn Mapper 1.01
The application loads microarray data (gene expression ratios) and determines which genes are up- or downregulated by a user-defined ratio cut-off level. For each experiment, lists of differentially expressed genes are computed. Every list will be compared to every other list, and the number of co-occurring genes will be calculated. With the use of the binomial distribution, so called z-values can be assigned to the overlap found between two...

Price: USD $0.00;   License: Freeware  
Platform: Windows 3.x, Windows , All

Analyzer - Venn Mapper - Microarray Data Analysis - Gene Expression Analyzer - Analyze Gene - Gene Expression - Microarray Data
No Screenshot CoNIFER 0.1 Alpha
CoNIFER, also knows as Copy Number Inference From Exome Reads is a Python-based tool that uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes. As exome capture reactions are subject to strong and systematic capture biases between sample batches, we implemented singular value decomposition (SVD) to eliminate these biases in exome data. CoNIFER offers the ability to mix exome...

Price: USD $0.00;   License: Freeware  
Platform: Windows 3.x, Windows , All

Sequence - CoNIFER - Sequence Read - Exome Sequence - Exome Read - Exome - Genotype
Screenshot of Framsticks Theater for Linux Framsticks Theater for Linux 2.10
The Framsticks Theater is an easy-to-use application which illustrates some basic phenomena, like genes and genetics, mutation, evolution, user-driven evolution and artificial selection, walking and swimming, artificial life simulation, virtual world interactions, etc. It includes a number of "shows", and new shows can be added by advanced users or developers.It can be run on standalone workstations as a show (artistic installations,...

Price: USD $9.00;   License: Shareware (Free to Try)   File Size: 1714 KB;
Platform: Linux

No Screenshot GOTaxExplorer 1.0
Comparative genomics visualization made easy. GOTaxExplorer presents a new approach to comparative genomics that integrates functional information and families with the taxonomic classification. It integrates UniProt, Gene Ontology, NCBI Taxonomy, Pfam and SMART in one database. GOTaxExplorer provides four different query types:1. selection of sets2. comparison of sets of Pfam families3. semantic comparison of sets of GO terms4. functional...

Price: USD $0.00;   License: Freeware   File Size: 1 KB;
Platform: Windows

Software - Planck - Max-Planck-InstitutMax - ScienceSaarbr - Uuml - CkenAlgorithmsComplexityResearch - UnitsArbeitsgruppenUseful - LinksDepartment - D3ProjectsAG3
No Screenshot DIVERGE 2.0
Detect functional divergence between member genes fast and easy. DIVERGE help you detect functional divergence between member genes of a protein family based on (site-specific) shifted evolutionary rates after gene duplication or speciation.

Price: USD $0.00;   License: Freeware   File Size: 2508 KB;
Platform: Windows

No Screenshot Genome2D 3.17
Genome2D visualizes a bacterial genome with all its individual genes on a single computer screen genome enables quick identification of biologically relevant information such as gene orientation, operon structure, transcriptional terminators or regulator binding sites. Bacterial genome analysis made easy.Using a simple input file subsets of genes can be visualized by single or multiple coloring or by a color gradient when values are used. The...

Price: USD $0.00;   License: Freeware   File Size: 13312 KB;
Platform: Windows

No Screenshot Biomorphs 3.5
Analyze the limitations of selection on genes with this tool. Biomorphs help you demonstrate the potential and the limitations of selection acting on genes and development. The software uses a recursive procedure to "develop" a numerical genotype into an image made of branching and overlapping lines.The software shows the user a "biomorph" image together with a set of its offspring, differing from the parent by one or a few...

Price: USD $0.00;   License: Freeware   File Size: 489 KB;
Platform: Windows

No Screenshot SeqWord Sniffer 1.0
SeqWord Sniffer is a Genomic DNA sequence automatic searcher, do an automatic search in genomic DNA sequences for loci enriched with the horizontally transferred elements, fitness genes, giant genes, genes for ribosomal RNA and proteins. Give SeqWord Sniffer a try to see what its really capable of.

Price: USD $0.00;   License: Freeware   File Size: 3051 KB;
Platform: Windows

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